I think this project is interesting, but if the engine used isn't specific to 960, wouldn't it omit issues related to castling? That would limit the accuracy of the analysis. I'm not familiar with this engine.
There's a decent article on 960 openings here: http://www.chess.com/groups/forumview/chess960-the-opening-makes-a-comeback
By the way, I've finally got my 960 rating above 1200! Made a great Christmas gift!
Opening theory will never be as prominent in 960 OTB play as it is in conventional chess. There is simply too much to memorize. However, I wonder if there will eventually be a "My System" of 960 that provides guidelines for opening play in various types of piece configurations. How would such a book influence conventional chess theory even beyond openings?