Post a link to the game, with a move number. It's possible that you were in check and the single pawn advance blocked that check.
Pawn Limitation - Please Advise.

http://www.chess.com/livechess/game?id=430338493
move 25/26.... wait a minute thats not the the en passant is it?

Still doesn't explain your original complaint because the pawn does move two spaces but then gets taken en passant. Don't understand what you mean by it only moving one space ?

Yeah that's en passant. It's to reward the other player for having their pawns deep in your territory. For you to be able to just pass them by moving two spaces seems unfair, hence, the rule was made several hundred years ago to prevent that.
here's the next game where the same thing happend.
Inverse en passant?

http://www.chess.com/livechess/game?id=430345327
move 33 in the next game
it must be he did it twice in a row.
In two consecutive games (usually towards the end) I intend to move a pawn out two spaces forward and it rejects my move and only advances it one space.
I looked into rules such as en passe and such but have yet to find an explanation for this.
Lag is very unlikely via my connection.