Which browser are you using for the email and what happens when you enter your @chess.com email address and password to login to emails?
problems with messages and e-mail

I am using internet explorer to log in. I am logging in directly from Chess.com, so I do not have to type in a password.

Can you try logging out of your emails then use this
http://www.chess.com/clear_cookies.html
Log back in and check emails.
Then If its still showing as having more than there are, let me know please.
Yesterday I when I checked how many messages I had, It said 360 or so. A lot right? Today I logged in and found that the counter said I had 283 messages. Impossible!! I did not delete any of my old messages! The counter is oviously wrong.
As for the e-mail problems, it still won't let me log on. The counter just says "new". I thought Chess.com was supposed to have this done already. They also promised no e-mail would be lost. This is not the case.
Is this happening with everyone's accounts or is it just me?