The downside to studying openings from Database use and things like that is that you are on your own to weave through the lines and figure out which lines mesh well.
You would be better off investing in a few opening repertoire books. What you have to figure out, first off, is what openings you want to play. You need:
A) An opening move for White (I recommend you go with either 1.e4 or 1.d4)
B) A defense to 1.e4 as Black
C) A defense to 1.d4 as Black
Let's say you took my answers - 1.e4, French, King's Indian.
Now you need to invest in a few books. At your level, best would be finding opening repertoire books of each. For example:
The Fully Fledged French by Viktor Moskalenko
David Vigorito's two books on the King's Indian from 2010ish
One of the many opening repertoire books for White based on 1.e4.
This should take you a few years to study and master. Once that is done, you should learn to expand within the openings you are going with.
So if you take mine, after having the basis for the French Defense, you can start using databases to expand your knowledge of the French. Also other books can help too. Sure, the lines the second book recommends may be different than the first book, but you are getting a different perspective of the opening. I own probably over 20 books on the French, have gotten many different perspectives, and could literally play any line of it with either color. I specifically won't play the Tarrasch or Exchange as White, but would be capable of playing them if I absolutely had to.
I've always heard that newer chess players do too much opening study, so I learned a few very basic openings like the London and King's Indian and focused on tactics. I'm at the point now that my puzzles rating is far above my rapid or daily rating, and my understanding of openings is far below that of the people I'm playing against.
To cut make this a quicker read I'll get straight to the point. I found opening trainers, is there any way to have a pre-made "repertoire"? I can't find a whole PGN download of popular openings. I then thought that I could just look up all the main lines for an opening and do it manually in the opening trainer, but many websites and youtube videos about the same openings conflict with each other, and it's a pretty tedious process. Is there a better website for opening training that will have solid lines of an opening already inserted which I can study? Is there a website where I can download the lines in form of a PGN and insert that into my opening trainer? I need someone to explain how to properly train openings, because I'm pretty helpless right now