You need to install an opening book (mainbook) into the Arena GUI. Then in the engine configuaration, tell each engine to use the Arena mainbook.
Engines Playing Same Opening?
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So I get Stockfish 7 and Komodo 9 to play eachother on Arena 3.5.1.
The only issue is, it seems like whenever Komodo 9 is white, the opening is always the same. Is there any way I can prevent this? Thanks