It shouldn't bother you that pieces are exchanged; chess is still chess even in endgame phase. Capablanca was at his best in simple positions.
In any case, you should welcome exchanges of your bad pieces for your opponent's good ones. Don't worry if he trades his good knight for your bad bishop or if he takes a lot of moves with a developed piece only to exchange one of your less devloped piece. Anyway, it's hard to talk in general about this because it is the concrete position that decides whether an exhange is good or bad.
I've played some people at 10 minute chess who try to trade pieces off as fast as possible to make the board simple enough that even they can understand it, and then they have about a 50-50 chance of winning :-) How do I handle that? By learning how to play chess better? Or is there a trick?